| Rank | Dossard | Name | Country | Team | Points |
|---|---|---|---|---|---|
| BÉON - km 130.5 | |||||
| 1 | 204 | Matthew Harley GOSS | OGE | 20 | |
| 2 | 143 | Yauheni HUTAROVICH | FDJ | 17 | |
| 3 | 057 | Peter SAGAN | LIQ | 15 | |
| 4 | 022 | Yukiya ARASHIRO | EUC | 13 | |
| 5 | 018 | Jens VOIGT | RNT | 11 | |
| 6 | 002 | Marcus BURGHARDT | BMC | 10 | |
| 7 | 141 | Sandy CASAR | FDJ | 9 | |
| 8 | 155 | Luis-Leon SANCHEZ | RAB | 8 | |
| 9 | 175 | Michael MORKOV | STB | 7 | |
| 10 | 066 | David MILLAR | GRS | 6 | |
| 11 | 041 | Michele SCARPONI | LAM | 5 | |
| 12 | 183 | Dmitriy FOFONOV | AST | 4 | |
| 13 | 069 | David ZABRISKIE | GRS | 3 | |
| 14 | 201 | Simon GERRANS | OGE | 2 | |
| 15 | 021 | Thomas VOECKLER | EUC | 1 | |
| Bellegarde-sur-valserine - km 194.5 | |||||
| 1 | 021 | Thomas VOECKLER | EUC | 20 | |
| 2 | 041 | Michele SCARPONI | LAM | 17 | |
| 3 | 018 | Jens VOIGT | RNT | 15 | |
| 4 | 155 | Luis-Leon SANCHEZ | RAB | 13 | |
| 5 | 194 | Dries DEVENYNS | OPQ | 11 | |
| 6 | 141 | Sandy CASAR | FDJ | 10 | |
| 7 | 035 | Egoi MARTINEZ | EUS | 9 | |
| 8 | 029 | Pierre ROLLAND | EUC | 8 | |
| 9 | 111 | Jurgen VAN DEN BROECK | LTB | 7 | |
| 10 | 183 | Dmitriy FOFONOV | AST | 6 | |
| 11 | 146 | Thibaut PINOT | FDJ | 5 | |
| 12 | 001 | Cadel EVANS | BMC | 4 | |
| 13 | 101 | Bradley WIGGINS | SKY | 3 | |
| 14 | 079 | Nicolas ROCHE | ALM | 2 | |
| 15 | 051 | Vincenzo NIBALI | LIQ | 1 | |