| Pos. | Team | Goals against |
|---|---|---|
| 1 | Greuther Fürth | 27 |
| 2 | Eintracht Frankfurt | 33 |
| 3 | FC St. Pauli | 34 |
| 4 | Fortuna Düsseldorf | 35 |
| 4 | Eintracht Braunschweig | 35 |
| 6 | SC Paderborn | 42 |
| 7 | 1860 München | 46 |
| 8 | Alemannia Aachen | 47 |
| 8 | MSV Duisburg | 47 |
| 10 | Energie Cottbus | 49 |
| 11 | Dynamo Dresden | 52 |
| 12 | VfL Bochum | 55 |
| 12 | Erzgebirge Aue | 55 |
| 14 | 1. FC Union Berlin | 58 |
| 14 | FC Ingolstadt 04 | 58 |
| 16 | FSV Frankfurt | 59 |
| 17 | Karlsruher SC | 60 |
| 18 | Hansa Rostock | 63 |