| Pos. | Team | Goals scored |
|---|---|---|
| 1 | Karlsruher SC | 69 |
| 1 | 1. FC Heidenheim | 69 |
| 3 | VfL Osnabrück | 64 |
| 4 | Preußen Münster | 63 |
| 5 | Arminia Bielefeld | 59 |
| 6 | Chemnitzer FC | 56 |
| 7 | 1. FC Saarbrücken | 52 |
| 8 | SV Wehen Wiesbaden | 51 |
| 9 | SpVgg Unterhaching | 48 |
| 10 | Wacker Burghausen | 45 |
| 11 | Rot-Weiß Erfurt | 44 |
| 12 | Kickers Offenbach | 41 |
| 13 | Alemannia Aachen | 40 |
| 14 | Hansa Rostock | 39 |
| 14 | Stuttgarter Kickers | 39 |
| 14 | Borussia Dortmund II | 39 |
| 17 | Hallescher FC | 37 |
| 18 | VfB Stuttgart II | 35 |
| 19 | SV Babelsberg 03 | 32 |
| 19 | SV Darmstadt 98 | 32 |