| Rank | Dossard | Name | Country | Team | Points |
|---|---|---|---|---|---|
| SAINT-BERTRAND DE COMMINGES - km 19.5 | |||||
| 1 | 186 | Leonardo DUQUE | COF | 6 | |
| 2 | 081 | Thor HUSHOVD | C.A | 4 | |
| 3 | 133 | Oscar FREIRE | RAB | 2 | |
| PRAT-BONREPAUX (D.117-D.33a) - km 69.0 | |||||
| 1 | 061 | Filippo POZZATO | LIQ | 6 | |
| 2 | 159 | Marco VELO | MRM | 4 | |
| 3 | 135 | Koos MOERENHOUT | RAB | 2 | |
| FOIX - km 167.5 | |||||
| 1 | 012 | Kurt-Asle ARVESEN | CSC | 25 | |
| 2 | 105 | Martin ELMIGER | ALM | 22 | |
| 3 | 072 | Alessandro BALLAN | LAM | 20 | |
| 4 | 135 | Koos MOERENHOUT | RAB | 18 | |
| 5 | 083 | Alexandre BOTCHAROV | C.A | 16 | |
| 6 | 141 | Pierrick FEDRIGO | BTL | 15 | |
| 7 | 061 | Filippo POZZATO | LIQ | 14 | |
| 8 | 169 | Benoît VAUGRENARD | FDJ | 13 | |
| 9 | 119 | Fabian WEGMANN | GST | 12 | |
| 10 | 159 | Marco VELO | MRM | 11 | |
| 11 | 085 | Dmitriy FOFONOV | C.A | 10 | |
| 12 | 187 | Amaël MOINARD | COF | 9 | |
| 13 | 081 | Thor HUSHOVD | C.A | 8 | |
| 14 | 151 | Erik ZABEL | MRM | 7 | |
| 15 | 186 | Leonardo DUQUE | COF | 6 | |
| 16 | 133 | Oscar FREIRE | RAB | 5 | |
| 17 | 041 | Kim KIRCHEN | THR | 4 | |
| 18 | 143 | Xavier FLORENCIO | BTL | 3 | |
| 19 | 191 | Christian VANDEVELDE | TSL | 2 | |
| 20 | 132 | Juan Antonio FLECHA | RAB | 1 | |